Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEL90164.1Hypothetical protein. (215 aa)    
Predicted Functional Partners:
SEL90139.1
LysR family transcriptional regulator, cys regulon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
       0.776
SEL90103.1
Hypothetical protein; Belongs to the GcvT family.
       0.762
SEL90122.1
Putative hydrolase of the HAD superfamily.
       0.762
SEL90088.1
TIGR00255 family protein.
       0.746
SEM20151.1
Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB.
   
 
 0.538
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
       0.505
SEL95062.1
FtsK/SpoIIIE family protein.
   
 
 0.487
SEM21244.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
   
 
 0.487
SEM64321.1
Phage-related protein, tail component.
   
 
 0.482
SEM61192.1
Hypothetical protein.
    
   0.473
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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