STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dlgD3-dehydro-L-gulonate 2-dehydrogenase; Catalyzes the reduction of 2,3-diketo-L-gulonate in the presence of NADH, to form 3-keto-L-gulonate. (332 aa)    
Predicted Functional Partners:
SEL95803.1
L-xylulokinase; Belongs to the FGGY kinase family.
 
  
  0.939
SEM26620.1
L-xylulokinase; Belongs to the FGGY kinase family.
 
  
  0.925
SEL95643.1
Ribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.656
SEL95612.1
Ribose transport system ATP-binding protein.
       0.653
SEL95558.1
DNA-binding transcriptional regulator, IclR family.
 
     0.627
SEL95675.1
Ribose transport system substrate-binding protein.
 
     0.624
SEL95705.1
Gluconolactonase.
 
     0.577
SEL95731.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.505
SEL95757.1
TRAP transporter, DctM subunit.
 
     0.438
SEL95778.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
     0.436
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.