Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SEL95731.1TRAP-type C4-dicarboxylate transport system, small permease component. (160 aa)    
Predicted Functional Partners:
SEL95757.1
TRAP transporter, DctM subunit.
 
 0.997
SEM60526.1
TRAP transporter, DctM subunit.
 
 0.985
SEL95778.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.950
SEM60559.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.853
SEL95705.1
Gluconolactonase.
       0.734
SEL89742.1
TRAP transporter, DctM subunit.
 
     0.699
SEL95558.1
DNA-binding transcriptional regulator, IclR family.
 
     0.574
dlgD
3-dehydro-L-gulonate 2-dehydrogenase; Catalyzes the reduction of 2,3-diketo-L-gulonate in the presence of NADH, to form 3-keto-L-gulonate.
 
    0.504
SEL95675.1
Ribose transport system substrate-binding protein.
       0.488
SEL95803.1
L-xylulokinase; Belongs to the FGGY kinase family.
  
    0.469
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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