Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM00509.1HemY protein. (413 aa)    
Predicted Functional Partners:
SEM00478.1
Conserved protein HemX.
 
  
 0.976
SEM61531.1
Cell division protein FtsN.
 
     0.712
SEL90474.1
Hypothetical protein.
  
     0.700
lolB
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
 
     0.687
SEM00875.1
Hypothetical protein.
  
     0.686
SEM56064.1
Conserved hypothetical protein.
  
     0.680
SEM11250.1
Universal stress protein A; Required for resistance to DNA-damaging agents. Belongs to the universal stress protein A family.
  
     0.678
SEM30006.1
Chaperone TorD involved in molybdoenzyme TorA maturation.
  
     0.673
MukB
Bacterial condensin subunit MukB; Belongs to the SMC family. MukB subfamily.
  
     0.652
SEM64704.1
Adenylate cyclase, class 1.
 
     0.651
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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