Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM03435.1PTS system, galactosamine-specific IIC component. (266 aa)    
Predicted Functional Partners:
SEM03406.1
PTS system, galactosamine-specific IID component.
 0.999
SEM03467.1
PTS system, galactosamine-specific IIB component.
 
 0.997
SEM22594.1
PTS system, N-acetylgalactosamine-specific IIA component.
 
 0.994
SEM22568.1
PTS system, N-acetylgalactosamine-specific IID component.
 
 0.981
SEM22487.1
Tagatose-6-phosphate ketose/aldose isomerase.
 
 
 0.977
SEM22511.1
PTS system, N-acetylgalactosamine-specific IIB component.
 
 
 0.927
SEM01916.1
Phosphocarrier protein HPr.
    
 0.902
SEM03387.1
Predicted secreted protein.
       0.449
SEM03493.1
tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA.
       0.424
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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