Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM00951.1HlyD family secretion protein. (334 aa)    
Predicted Functional Partners:
SEM00929.1
Outer membrane protein TolC.
 
 
 0.967
SEM01013.1
ABC-2 type transport system permease protein.
 
  
 0.955
SEM00983.1
ABC-2 type transport system permease protein.
 
     0.947
SEM42629.1
ABC-2 type transport system permease protein.
 
  
 0.672
SEL89163.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
 
 0.643
SEM42675.1
HlyD family secretion protein.
  
     0.555
SEM02137.1
Membrane fusion protein, multidrug efflux system.
 
     0.552
SEM19611.1
Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.548
SEL90396.1
ATP-binding cassette, subfamily C, LapB.
  
 
 0.542
SEM20151.1
Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB.
  
  
 0.539
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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