Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM01204.1Protein transport protein HofQ. (354 aa)    
Predicted Functional Partners:
SEM44759.1
Protein transport protein HofC.
 
 
 
 0.921
SEM44794.1
Protein transport protein HofB.
 
 
 
 0.916
SEM01277.1
Hypothetical protein.
  
 
 0.913
SEM01231.1
Hypothetical protein.
       0.773
SEM01254.1
Hypothetical protein.
       0.773
SEM01317.1
Penicillin-binding protein 1A.
     
 0.679
bamA
Outer membrane protein insertion porin family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.556
SEM44828.1
Prepilin peptidase dependent protein D.
 
   
 0.551
nusB
N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
       0.521
SEM24093.1
Magnesium chelatase family protein.
      
 0.512
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.