Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM02137.1Membrane fusion protein, multidrug efflux system. (386 aa)    
Predicted Functional Partners:
EmrB
MFS transporter, DHA2 family, multidrug resistance protein; Belongs to the major facilitator superfamily.
 
 
 0.981
SEL89163.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
 
 0.847
SEM02161.1
MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB.
 
  
 0.813
SEM00929.1
Outer membrane protein TolC.
  
 
 0.697
SEM00951.1
HlyD family secretion protein.
 
     0.552
SEL90396.1
ATP-binding cassette, subfamily C, LapB.
  
 
 0.542
SEM20151.1
Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB.
  
  
 0.539
SEL90422.1
Outer membrane protein TolC.
  
 
 0.506
SEM42675.1
HlyD family secretion protein.
 
     0.468
SEM42629.1
ABC-2 type transport system permease protein.
 
  
 0.446
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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