Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SEM02307.1Thioredoxin reductase (NADPH). (318 aa)    
Predicted Functional Partners:
SEM29973.1
Thioredoxin 1; Belongs to the thioredoxin family.
 
 0.996
SEM00531.1
Putative thioredoxin.
  
 
 0.726
SEM02279.1
Hypothetical protein.
       0.693
SEM42258.1
Tetratricopeptide repeat-containing protein.
  
 
 0.661
msrA
Peptide methionine sulfoxide reductase msrA/msrB; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.658
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
 
 0.637
SEL94475.1
Glutaredoxin-family domain-containing protein.
  
 
 0.606
SEL89458.1
Thiol-disulfide isomerase or thioredoxin.
  
 
 0.592
SEM51247.1
Cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE.
  
 
 0.592
SEM20151.1
Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB.
 
  
 0.581
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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