Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM05738.1DNA polymerase. (685 aa)    
Predicted Functional Partners:
SEM05820.1
SNF2 family N-terminal domain-containing protein.
 
   0.951
SEM05793.1
VRR-NUC domain-containing protein.
 
     0.949
SEM05499.1
Protein of unknown function.
 
     0.812
SEM05470.1
Protein of unknown function.
 
     0.810
SEM05762.1
Hypothetical protein.
       0.773
SEM05907.1
Hypothetical protein.
 
     0.591
SEM05935.1
HNH endonuclease.
 
     0.557
SEM05718.1
Hypothetical protein.
       0.556
SEM05677.1
Phage anti-repressor protein.
       0.531
SEM05630.1
BRO family, N-terminal domain.
 
     0.515
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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