STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM05793.1VRR-NUC domain-containing protein. (89 aa)    
Predicted Functional Partners:
SEM05820.1
SNF2 family N-terminal domain-containing protein.
 
     0.951
SEM05738.1
DNA polymerase.
 
     0.950
SEM05470.1
Protein of unknown function.
 
     0.822
SEM05499.1
Protein of unknown function.
 
     0.822
SEM05762.1
Hypothetical protein.
       0.773
SEM05907.1
Hypothetical protein.
 
     0.615
SEM05935.1
HNH endonuclease.
 
     0.580
SEM05718.1
Hypothetical protein.
       0.556
SEM05677.1
Phage anti-repressor protein.
       0.536
SEM05630.1
BRO family, N-terminal domain.
 
     0.513
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.