Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM06035.1Integrase; Belongs to the 'phage' integrase family. (380 aa)    
Predicted Functional Partners:
SEM06008.1
Hypothetical protein.
       0.776
SEM05986.1
Hypothetical protein.
       0.773
SEM05935.1
HNH endonuclease.
       0.564
SEM05907.1
Hypothetical protein.
       0.562
SEM05963.1
Phage uncharacterized protein TIGR01671.
       0.556
SEL96375.1
comF family protein.
   
    0.538
SEM05874.1
Hypothetical protein.
       0.529
SEM20151.1
Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB.
   
  
 0.512
SEM29944.1
Chorismate mutase.
  
    0.482
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
     
 0.459
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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