SEM06691.1 protein (Pasteurella skyensis) - STRING interaction network

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

SEM06691.1

Uncharacterized protein. (173 aa)

Predicted Functional Partners:

rpmF

0.964

rplK

0.863

rpsC

0.846

rplA

0.845

rpsF

0.830

rpsB

0.827

rplM

0.826

rplU

0.823

rpsP

0.821

SEM46772.1

0.821

Your Current Organism:

Pasteurella skyensis

NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEM06691.1	SEM46772.1	SAMN05444853_10459	SAMN05444853_11934	Uncharacterized protein.	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	0.821
SEM06691.1	rplA	SAMN05444853_10459	SAMN05444853_10235	Uncharacterized protein.	Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.845
SEM06691.1	rplK	SAMN05444853_10459	SAMN05444853_10234	Uncharacterized protein.	Large subunit ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.863
SEM06691.1	rplM	SAMN05444853_10459	SAMN05444853_101102	Uncharacterized protein.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.826
SEM06691.1	rplU	SAMN05444853_10459	SAMN05444853_11430	Uncharacterized protein.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.823
SEM06691.1	rpmF	SAMN05444853_10459	SAMN05444853_10460	Uncharacterized protein.	Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.964
SEM06691.1	rpsB	SAMN05444853_10459	SAMN05444853_101108	Uncharacterized protein.	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.827
SEM06691.1	rpsC	SAMN05444853_10459	SAMN05444853_102126	Uncharacterized protein.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.846
SEM06691.1	rpsF	SAMN05444853_10459	SAMN05444853_11445	Uncharacterized protein.	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	0.830
SEM06691.1	rpsP	SAMN05444853_10459	SAMN05444853_10915	Uncharacterized protein.	Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.821
SEM46772.1	SEM06691.1	SAMN05444853_11934	SAMN05444853_10459	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Uncharacterized protein.	0.821
SEM46772.1	rplA	SAMN05444853_11934	SAMN05444853_10235	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.890
SEM46772.1	rplK	SAMN05444853_11934	SAMN05444853_10234	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Large subunit ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.900
SEM46772.1	rplM	SAMN05444853_11934	SAMN05444853_101102	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.926
SEM46772.1	rplU	SAMN05444853_11934	SAMN05444853_11430	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.902
SEM46772.1	rpmF	SAMN05444853_11934	SAMN05444853_10460	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.856
SEM46772.1	rpsB	SAMN05444853_11934	SAMN05444853_101108	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.952
SEM46772.1	rpsC	SAMN05444853_11934	SAMN05444853_102126	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.952
SEM46772.1	rpsF	SAMN05444853_11934	SAMN05444853_11445	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	0.947
SEM46772.1	rpsP	SAMN05444853_11934	SAMN05444853_10915	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.897