STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM07677.1Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains. (222 aa)    
Predicted Functional Partners:
SEM07698.1
tRNA 2-thiouridine synthesizing protein D.
  
    0.806
SEM07721.1
tRNA 2-thiouridine synthesizing protein C; Belongs to the DsrF/TusC family.
  
    0.801
SEM07738.1
tRNA 2-thiouridine synthesizing protein B.
       0.790
SEM61309.1
Hypothetical protein.
  
     0.662
SEM07650.1
FKBP-type peptidyl-prolyl cis-trans isomerase FkpA.
       0.653
SEM45972.1
Hypothetical protein.
  
     0.552
SEM59590.1
Hypothetical protein; Belongs to the UPF0231 family.
  
     0.522
SEM65043.1
Acetolactate synthase, small subunit.
  
     0.519
slyX
SlyX protein; Belongs to the SlyX family.
       0.508
SEL96620.1
Hypothetical protein.
  
     0.491
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.