STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM12182.1Uncharacterized membrane protein. (137 aa)    
Predicted Functional Partners:
SEM16217.1
Protein TonB.
  
     0.737
SEM12165.1
Nitroreductase / dihydropteridine reductase.
       0.705
SEM12120.1
Semialdehyde dehydrogenase, NAD binding domain.
 
     0.583
SEM12141.1
Hypothetical protein.
       0.530
SEM40207.1
Protein of unknown function.
  
     0.505
SEL88816.1
Glutamate or tyrosine decarboxylase.
  
     0.493
SEM12209.1
Catalase.
       0.403
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.