STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM10281.1Hypothetical protein. (237 aa)    
Predicted Functional Partners:
tsaD
N6-L-threonylcarbamoyladenine synthase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
 0.832
SEM10310.1
tRNA(Met) cytidine acetyltransferase.
  
   0.787
SEM42081.1
Hypothetical protein.
  
     0.726
SEM32091.1
Phosphoethanolamine transferase for glucans (OPG), alkaline phosphatase superfamily.
  
     0.702
SEM10257.1
YhcH/YjgK/YiaL family protein.
 
     0.692
SEM69389.1
Hypothetical protein.
  
     0.603
SEM27089.1
Coiled stalk of trimeric autotransporter adhesin.
  
     0.550
SEM67947.1
Coiled stalk of trimeric autotransporter adhesin.
  
     0.532
SEM40832.1
Hypothetical protein.
  
     0.500
SEM32287.1
Hypothetical protein.
  
     0.453
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.