Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM11725.1Tyrosine-specific transport protein. (403 aa)    
Predicted Functional Partners:
SEM45972.1
Hypothetical protein.
  
     0.630
SEM31338.1
C4-dicarboxylate transporter, DcuC family.
  
     0.595
trpR
TrpR family transcriptional regulator, trp operon repressor; This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription.
  
   
 0.575
frdC
Fumarate reductase subunit C; Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane.
  
     0.532
SEM18115.1
O-succinylbenzoate synthase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.526
SEM36986.1
Uncharacterized membrane protein.
  
 
   0.500
rlmE
23S rRNA (uridine2552-2'-O)-methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
       0.497
SEM63589.1
Phage-related protein.
  
     0.437
SEM50670.1
Protein of unknown function.
  
     0.431
SEM63669.1
Lambda-like phage minor tail protein L.
  
     0.427
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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