Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SEM12015.1Peroxiredoxin, Ohr subfamily. (137 aa)    
Predicted Functional Partners:
SEM11969.1
DNA-binding transcriptional regulator, MarR family.
 
  
 0.916
SEM11992.1
NADP-dependent alcohol dehydrogenase.
       0.754
SEM12035.1
Secreted repeat of unknown function.
       0.732
SEM12062.1
Putative intracellular protease/amidase.
  
  
 0.720
SEM10075.1
Starvation-inducible DNA-binding protein; Belongs to the Dps family.
  
  
 0.648
msrA
Peptide methionine sulfoxide reductase msrA/msrB; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.559
SEM61192.1
Hypothetical protein.
   
    0.514
SEM12209.1
Catalase.
  
  
 0.457
SEM11943.1
Glutathione S-transferase; Belongs to the GST superfamily.
     
 0.444
bamE
Outer membrane protein assembly factor BamE; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
  
 0.428
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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