Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM13348.1Head domain of trimeric autotransporter adhesin. (1857 aa)    
Predicted Functional Partners:
SEM50670.1
Protein of unknown function.
  
     0.732
SEM42081.1
Hypothetical protein.
  
     0.726
SEM69389.1
Hypothetical protein.
  
     0.598
SEM40832.1
Hypothetical protein.
  
     0.549
SEM27089.1
Coiled stalk of trimeric autotransporter adhesin.
  
     0.546
SEM31544.1
Hemoglobin/transferrin/lactoferrin receptor protein.
  
     0.512
SEM42258.1
Tetratricopeptide repeat-containing protein.
  
     0.496
SEM67947.1
Coiled stalk of trimeric autotransporter adhesin.
  
     0.486
rnhA
Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
  
 0.472
SEM34805.1
P22AR C-terminal domain-containing protein.
  
     0.439
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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