STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM13395.1Autotransporter adhesin. (2390 aa)    
Predicted Functional Partners:
SEM42081.1
Hypothetical protein.
  
     0.725
SEM50670.1
Protein of unknown function.
  
     0.720
SEM69389.1
Hypothetical protein.
  
     0.633
SEM27089.1
Coiled stalk of trimeric autotransporter adhesin.
  
     0.581
SEM67947.1
Coiled stalk of trimeric autotransporter adhesin.
  
     0.527
SEM31544.1
Hemoglobin/transferrin/lactoferrin receptor protein.
  
     0.490
SEM42258.1
Tetratricopeptide repeat-containing protein.
  
     0.480
SEM40832.1
Hypothetical protein.
  
     0.470
ruvA
Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
       0.469
SEM13368.1
Hypothetical protein.
       0.461
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.