Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SEM15007.1Serine transporter. (430 aa)    
Predicted Functional Partners:
SEM10075.1
Starvation-inducible DNA-binding protein; Belongs to the Dps family.
    
   0.735
SEM15031.1
Cystathionine beta-lyase.
     
 0.644
SEM31338.1
C4-dicarboxylate transporter, DcuC family.
  
     0.608
SEM45972.1
Hypothetical protein.
  
     0.591
potE
Putrescine:ornithine antiporter; Catalyzes both the uptake and excretion of putrescine. The uptake of putrescine is dependent on the membrane potential and the excretion involves putrescine-ornithine antiporter activity. Belongs to the amino acid-polyamine-organocation (APC) superfamily. Basic amino acid/polyamine antiporter (APA) (TC 2.A.3.2) family.
  
 
   0.569
SEM21378.1
L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
  
  
 0.480
SEM64938.1
C4-dicarboxylate transporter, DcuC family.
  
     0.453
SEM36277.1
PhoP regulatory network protein YrbL.
  
 
 0.411
SEM51000.1
TorA specific chaperone.
  
     0.406
SEL91651.1
ABC-2 type transport system permease protein.
  
   
 0.400
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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