Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SEM17851.1iron(III) transport system permease protein. (555 aa)    
Predicted Functional Partners:
SEM17822.1
iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.992
SEM18088.1
iron(III) transport system substrate-binding protein.
 
 
 0.987
potA
Spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
 
 0.564
SEM66403.1
CxxC motif-containing protein, DUF1111 family.
  
    0.501
SEM31128.1
Thiamine transport system substrate-binding protein.
 
  
 0.460
SEM17870.1
N-acetylmuramoyl-L-alanine amidase.
  
    0.435
SEM66425.1
Putative iron-regulated protein.
  
    0.410
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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