STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM20151.1Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB. (608 aa)    
Predicted Functional Partners:
SEM20921.1
Two-component system, OmpR family, aerobic respiration control protein ArcA.
 
 0.999
SEM11305.1
Two-component system, OmpR family, response regulator CpxR.
 
 
 0.988
SEL95675.1
Ribose transport system substrate-binding protein.
  
 
 0.963
SEL97067.1
Ribose transport system substrate-binding protein.
  
 
 0.963
SEM01510.1
Autoinducer 2-binding protein.
  
 
 0.963
SEM19995.1
Inositol transport system substrate-binding protein.
 
 
 0.963
SEM20026.1
Inositol transport system substrate-binding protein.
 
 
 0.963
SEM26526.1
Ribose transport system substrate-binding protein.
  
 
 0.963
SEM47031.1
Simple sugar transport system substrate-binding protein.
  
 
 0.963
SEM51641.1
Methyl-galactoside transport system substrate-binding protein.
  
 
 0.963
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.