Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SEM20671.1Hexapeptide repeat of succinyl-transferase. (188 aa)    
Predicted Functional Partners:
SEM20641.1
Polysaccharide transporter, PST family.
  
  
 0.861
SEM20607.1
UDP-N-acetyl-D-galactosamine dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
   
 0.816
SEM20867.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
  
  
 0.806
SEM20580.1
UDP-N-acetylglucosamine 4-epimerase.
  
  
 0.784
SEM20697.1
RimK-like ATP-grasp domain-containing protein.
       0.782
SEM20890.1
Hypothetical protein; NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
  
  
 0.748
SEM20760.1
Glycosyl transferases group 1.
  
  
 0.642
SEM20808.1
Glycosyltransferase involved in cell wall bisynthesis.
  
  
 0.642
SEM20833.1
Nucleoside-diphosphate-sugar epimerase.
  
  
 0.641
SEM20731.1
Hypothetical protein.
       0.604
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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