STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM20697.1RimK-like ATP-grasp domain-containing protein. (338 aa)    
Predicted Functional Partners:
SEM20641.1
Polysaccharide transporter, PST family.
 
     0.834
SEM20580.1
UDP-N-acetylglucosamine 4-epimerase.
 
     0.827
SEM20607.1
UDP-N-acetyl-D-galactosamine dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
     0.819
SEM20671.1
Hexapeptide repeat of succinyl-transferase.
       0.783
SEM20760.1
Glycosyl transferases group 1.
 
   
 0.672
SEM20867.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
       0.633
SEM20808.1
Glycosyltransferase involved in cell wall bisynthesis.
     
 0.613
SEM20890.1
Hypothetical protein; NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
       0.613
SEM20833.1
Nucleoside-diphosphate-sugar epimerase.
       0.612
SEM20779.1
Hypothetical protein.
  
    0.605
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.