Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM20697.1RimK-like ATP-grasp domain-containing protein. (338 aa)    
Predicted Functional Partners:
SEM20641.1
Polysaccharide transporter, PST family.
 
     0.836
SEM20580.1
UDP-N-acetylglucosamine 4-epimerase.
 
   
 0.825
SEM20607.1
UDP-N-acetyl-D-galactosamine dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
     0.813
SEM20671.1
Hexapeptide repeat of succinyl-transferase.
       0.782
SEM20760.1
Glycosyl transferases group 1.
 
     0.665
SEM20867.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
       0.624
SEM20890.1
Hypothetical protein; NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
       0.611
SEM20833.1
Nucleoside-diphosphate-sugar epimerase.
     
 0.609
SEM20808.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.605
SEM20731.1
Hypothetical protein.
       0.603
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.