STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM20890.1Hypothetical protein; NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC. (626 aa)    
Predicted Functional Partners:
SEM20867.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
  
 0.961
SEM29533.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.917
SEM20833.1
Nucleoside-diphosphate-sugar epimerase.
 
  
 0.905
SEM20808.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
 0.887
SEM20760.1
Glycosyl transferases group 1.
 
  
 0.843
SEM20641.1
Polysaccharide transporter, PST family.
  
  
 0.812
SEM20731.1
Hypothetical protein.
       0.783
SEM20779.1
Hypothetical protein.
       0.775
SEM20671.1
Hexapeptide repeat of succinyl-transferase.
  
  
 0.774
SEM20607.1
UDP-N-acetyl-D-galactosamine dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.715
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.