Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM23387.1PTS system, ascorbate-specific IIC component. (593 aa)    
Predicted Functional Partners:
SEM23413.1
PTS system, ascorbate-specific IIA component.
 
 
 0.995
SEM23361.1
L-ascorbate 6-phosphate lactonase.
 
 
 0.990
UlaD
3-dehydro-L-gulonate-6-phosphate decarboxylase.
 
  
 0.943
SEM01916.1
Phosphocarrier protein HPr.
    
 0.922
SEM23310.1
L-xylulose 5-phosphate 3-epimerase.
 
  
 0.913
SEM06116.1
Lichenan operon transcriptional antiterminator.
 
  
 0.728
SEM23283.1
L-ribulose-5-phosphate 4-epimerase.
 
  
 0.683
SEM17114.1
PTS system, nitrogen regulatory IIA component.
  
  
 0.665
SEM07593.1
PTS system, sucrose-specific IIC component.
 
  
 0.604
SEM36535.1
PTS system, N-acetylglucosamine-specific IIC component.
 
  
 0.590
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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