STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM22437.1Hypothetical protein; DeoR family transcriptional regulator, aga operon transcriptional repressor/DeoR family transcriptional regulator, fructose operon transcriptional repressor. (261 aa)    
Predicted Functional Partners:
SEM22487.1
Tagatose-6-phosphate ketose/aldose isomerase.
 
    0.809
SEM22464.1
D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ.
  
    0.788
SEM22511.1
PTS system, N-acetylgalactosamine-specific IIB component.
  
    0.673
SEM22543.1
PTS system, N-acetylgalactosamine-specific IIC component.
  
    0.578
SEM22568.1
PTS system, N-acetylgalactosamine-specific IID component.
  
    0.569
SEM22620.1
N-acetylglucosamine-6-phosphate deacetylase.
 
    0.517
SEM22408.1
D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase.
       0.510
SEM26729.1
PTS hybrid protein.
 
  
 0.439
SEM22594.1
PTS system, N-acetylgalactosamine-specific IIA component.
  
  
 0.430
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.