Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM25231.1CRISPR-associated protein Cmr1. (105 aa)    
Predicted Functional Partners:
SEM25179.1
CRISPR-associated protein Cmr2.
 
 
   0.933
SEM25085.1
CRISPR-associated protein Cmr6.
 
 
 
 0.895
SEM25132.1
CRISPR-associated protein Cmr4.
 
 
 
 0.893
SEM25157.1
CRISPR type III-B/RAMP module-associated protein Cmr3.
 
 
   0.884
SEM25107.1
CRISPR-associated protein Cmr5.
 
 
   0.882
SEM25204.1
CRISPR-associated protein Cmr1.
      0.727
SEM25063.1
CRISPR-associated protein Csx16.
 
     0.669
rdgC
Recombination associated protein RdgC; May be involved in recombination; Belongs to the RdgC family.
       0.431
SEM25274.1
dATP pyrophosphohydrolase.
       0.431
SEM25614.1
DNA-binding regulatory protein, YebC/PmpR family.
       0.403
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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