Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SEM26092.1Cytochrome d ubiquinol oxidase subunit I. (517 aa)    
Predicted Functional Partners:
SEM26054.1
Cytochrome d ubiquinol oxidase subunit II.
 0.999
SEL89608.1
ATP-binding cassette, subfamily C, CydD.
 
  
 0.871
SEL89588.1
ATP-binding cassette, subfamily C, CydC.
 
  
 0.865
SEM26000.1
Cyd operon protein YbgE.
  
    0.675
SEL96455.1
ATP-binding cassette, subfamily C.
  
  
 0.609
SEM39281.1
Fumarate reductase iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
     
 0.591
SEM22339.1
Glutamate synthase (NADPH/NADH) large chain.
      
 0.504
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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