STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM26491.1Helix-turn-helix domain-containing protein. (312 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.534
SEM56064.1
Conserved hypothetical protein.
  
     0.507
SEM26526.1
Ribose transport system substrate-binding protein.
       0.497
SEM47098.1
Hypothetical protein.
  
     0.492
SEM20151.1
Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB.
  
   
 0.481
SEM26445.1
Ferredoxin.
       0.472
SEM26458.1
Ribonucleoside-diphosphate reductase class Ia beta subunit.
       0.472
ftsL
Cell division protein FtsL; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
  
     0.455
SEM31047.1
Uncharacterized membrane protein YhdT.
  
     0.439
SEM20977.1
HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes.
  
  
 0.425
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.