Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SEM24994.1Nitroreductase. (187 aa)    
Predicted Functional Partners:
SEM25016.1
Short-chain dehydrogenase.
       0.773
prmB
Ribosomal protein L3 glutamine methyltransferase; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.
       0.681
SEM22339.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.515
SEL87788.1
Ribosomal protein S12 methylthiotransferase accessory factor.
  
  
 0.507
SEM56904.1
Biotin--[acetyl-CoA-carboxylase] ligase; BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase.
  
    0.490
SEM24950.1
DNA-nicking endonuclease, Smr domain.
       0.488
SEL91651.1
ABC-2 type transport system permease protein.
  
    0.476
SEM21434.1
Long-chain acyl-CoA synthetase.
 
 
   0.454
SEM31697.1
Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.
  
    0.449
SEM01013.1
ABC-2 type transport system permease protein.
  
    0.443
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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