Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM27056.1Coiled stalk of trimeric autotransporter adhesin. (460 aa)    
Predicted Functional Partners:
SEM27089.1
Coiled stalk of trimeric autotransporter adhesin.
 
    
0.823
SEL92403.1
Head domain of trimeric autotransporter adhesin.
  
     0.774
SEM68426.1
Head domain of trimeric autotransporter adhesin.
  
     0.774
SEM67822.1
Head domain of trimeric autotransporter adhesin.
  
     0.773
SEM13487.1
Head domain of trimeric autotransporter adhesin.
  
     0.769
SEM24857.1
Head domain of trimeric autotransporter adhesin.
  
     0.769
SEM42099.1
Head domain of trimeric autotransporter adhesin.
  
     0.753
SEM69017.1
Head domain of trimeric autotransporter adhesin.
  
     0.751
SEM50670.1
Protein of unknown function.
  
     0.682
SEM40832.1
Hypothetical protein.
  
     0.441
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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