Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM28423.1Helix-turn-helix domain-containing protein. (246 aa)    
Predicted Functional Partners:
SEM28398.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
 
    0.869
SEM40755.1
Hypothetical protein.
  
     0.661
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.656
SEM28367.1
Protein of unknown function (DU1801).
  
    0.648
SEM40523.1
Hypothetical protein.
  
     0.611
SEM09963.1
2-Methylisocitrate lyase, PEP mutase family.
  
     0.593
SEM20151.1
Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB.
      
 0.512
SEM44340.1
DNA-binding transcriptional regulator, MarR family.
  
  
 0.496
udk
Uridine kinase.
       0.447
SEM41334.1
WG containing repeat-containing protein.
  
 
   0.400
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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