Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM28940.1Tight adherence protein B. (293 aa)    
Predicted Functional Partners:
SEM28910.1
Pilus assembly protein CpaF.
 
 
 0.998
SEM28806.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
 
 0.997
SEM28882.1
Pilus assembly protein CpaE.
  
 
 0.995
SEM28975.1
Tight adherence protein C.
 
  
 0.995
SEM28762.1
Pilus assembly protein CpaB.
  
 
 0.991
SEM29042.1
Tight adherence protein E.
  
  
 0.876
SEM29065.1
Tight adherence protein F.
     
 0.861
SEM29004.1
Tight adherence protein D.
  
  
 0.853
SEM28731.1
Prepilin peptidase CpaA.
  
  
 0.818
SEM28842.1
Rough colony protein B, tight adherence-tad-subunit.
     
 0.793
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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