STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM28975.1Tight adherence protein C. (284 aa)    
Predicted Functional Partners:
SEM28910.1
Pilus assembly protein CpaF.
 
  
 0.977
SEM28806.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.953
SEM28940.1
Tight adherence protein B.
 
   
 0.949
SEM28882.1
Pilus assembly protein CpaE.
  
  
 0.927
SEM28762.1
Pilus assembly protein CpaB.
  
  
 0.903
SEM29042.1
Tight adherence protein E.
  
  
 0.842
SEM29004.1
Tight adherence protein D.
  
  
 0.799
SEM28842.1
Rough colony protein B, tight adherence-tad-subunit.
       0.742
SEM28731.1
Prepilin peptidase CpaA.
  
  
 0.729
SEM29065.1
Tight adherence protein F.
     
 0.724
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.