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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM29004.1Tight adherence protein D. (254 aa)    
Predicted Functional Partners:
SEM28940.1
Tight adherence protein B.
  
  
 0.829
SEM28882.1
Pilus assembly protein CpaE.
  
  
 0.821
SEM28806.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
  
  
 0.811
SEM28910.1
Pilus assembly protein CpaF.
  
  
 0.807
SEM28975.1
Tight adherence protein C.
  
  
 0.799
SEM28842.1
Rough colony protein B, tight adherence-tad-subunit.
     
 0.772
SEM28762.1
Pilus assembly protein CpaB.
  
  
 0.767
SEM29042.1
Tight adherence protein E.
  
  
 0.756
SEM29065.1
Tight adherence protein F.
     
 0.753
SEM28731.1
Prepilin peptidase CpaA.
     
 0.647
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.