Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SEM30986.1Phospholipid-binding lipoprotein MlaA. (252 aa)    
Predicted Functional Partners:
SEM55685.1
Phospholipid transport system substrate-binding protein.
 
 
 
 0.916
SEM31097.1
Outer membrane protein (porin).
   
 
 0.867
SEM55710.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
   
 0.796
SEM55740.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
   
 0.648
SEM55766.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
   
 0.580
bamD
Outer membrane protein assembly factor BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.559
metJ
MetJ family transcriptional regulator, methionine regulon repressor; This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis; Belongs to the MetJ family.
       0.520
SEL88865.1
Lipopolysaccharide export system permease protein.
  
   
 0.485
lptD
LPS-assembly protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
  
 0.470
SEM55662.1
Phospholipid transport system transporter-binding protein.
     
 0.467
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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