STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM31544.1Hemoglobin/transferrin/lactoferrin receptor protein. (988 aa)    
Predicted Functional Partners:
SEM43054.1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.779
SEM50670.1
Protein of unknown function.
  
     0.676
SEL94648.1
Hypothetical protein.
  
 
 0.645
SEM42258.1
Tetratricopeptide repeat-containing protein.
 
  
 0.539
SEM13348.1
Head domain of trimeric autotransporter adhesin.
  
     0.512
SEM24046.1
TIGR01666 family membrane protein.
  
     0.491
SEM13395.1
Autotransporter adhesin.
  
     0.490
SEM67822.1
Head domain of trimeric autotransporter adhesin.
  
   
 0.485
SEM66697.1
Coiled stalk of trimeric autotransporter adhesin.
  
     0.457
SEM13511.1
Autotransporter adhesin.
  
     0.417
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.