Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM32469.1Phage anti-repressor protein. (241 aa)    
Predicted Functional Partners:
SEM32531.1
Prophage regulatory protein.
       0.776
SEM32429.1
Hypothetical protein.
       0.773
SEM32446.1
Terminase small subunit.
       0.773
SEM32506.1
Hypothetical protein.
       0.773
SEM32287.1
Hypothetical protein.
 
     0.610
SEM32313.1
Hypothetical protein.
       0.516
SEM32347.1
Hypothetical protein.
       0.516
SEM32371.1
Hypothetical protein.
       0.516
SEM32397.1
Ash protein family protein.
       0.516
SEM32579.1
Hypothetical protein.
       0.482
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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