STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM34240.1Phage replication protein O. (331 aa)    
Predicted Functional Partners:
SEM34212.1
Replicative DNA helicase.
  
  
 0.800
SEM34150.1
Phage N-6-adenine-methyltransferase.
  
    0.782
SEM34123.1
Hypothetical protein.
       0.776
SEM34094.1
Hypothetical protein.
       0.773
SEM34269.1
Hypothetical protein.
       0.773
SEM34067.1
Hypothetical protein.
       0.762
SEM34303.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
       0.613
SEM34039.1
Bacteriophage Lambda NinG protein.
       0.547
SEM33976.1
Hypothetical protein.
       0.499
SEM34011.1
Hypothetical protein.
       0.499
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.