STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM35398.1Competence protein ComEC. (775 aa)    
Predicted Functional Partners:
SEL96375.1
comF family protein.
 
  
 0.830
SEL94947.1
DNA processing protein.
 
  
 0.760
SEM44759.1
Protein transport protein HofC.
 
  
 0.744
SEM44728.1
Leader peptidase HopD.
  
  
 0.687
SEM44794.1
Protein transport protein HofB.
 
  
 0.637
PssA
CDP-diacylglycerol---serine O-phosphatidyltransferase.
   
 
 0.614
SEM07799.1
Prepilin peptidase dependent protein A.
  
  
 0.610
SEL95851.1
Competence protein ComEA.
 
  
 0.601
SEM14317.1
DNA polymerase III, delta subunit.
 
   
 0.588
SEM21244.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
 
  
 0.576
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.