Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM35613.1Uncharacterized conserved protein, LabA/DUF88 family. (319 aa)    
Predicted Functional Partners:
trmB
tRNA (guanine-N7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.524
SEM35662.1
Hypothetical protein; Belongs to the UPF0352 family.
       0.507
SEM35687.1
Hypothetical protein.
       0.507
SEM35560.1
Hypothetical protein.
       0.497
SEM35585.1
Hypothetical protein.
       0.497
SEM35530.1
Curli biogenesis system outer membrane secretion channel CsgG.
       0.488
SEM35712.1
Dinuclear metal center protein, YbgI/SA1388 family.
     
 0.486
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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