Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM37666.1Hypothetical protein. (117 aa)    
Predicted Functional Partners:
SEM37633.1
Hypothetical protein.
       0.785
SEM37701.1
Hypothetical protein.
       0.785
SEM37724.1
Hypothetical protein.
       0.785
SEM37752.1
Hypothetical protein.
       0.784
SEM37779.1
Hypothetical protein.
       0.784
SEM37606.1
Protein of unknown function.
       0.776
SEM37573.1
Phage tail fibre repeat-containing protein.
       0.760
SEM37561.1
Protein of unknown function.
       0.754
SEM37535.1
Hypothetical protein.
       0.746
SEM37807.1
Hypothetical protein.
       0.580
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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