STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM40832.1Hypothetical protein. (295 aa)    
Predicted Functional Partners:
tadA
tRNA(adenine34) deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.773
SEM32091.1
Phosphoethanolamine transferase for glucans (OPG), alkaline phosphatase superfamily.
  
     0.695
SEM50670.1
Protein of unknown function.
  
     0.644
SEM13348.1
Head domain of trimeric autotransporter adhesin.
  
     0.549
deaD
ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
   
   0.549
SEM13511.1
Autotransporter adhesin.
  
     0.540
SEM40781.1
Winged helix-turn-helix DNA-binding.
       0.509
SEM10281.1
Hypothetical protein.
  
     0.500
SEM42081.1
Hypothetical protein.
  
     0.486
SEM13395.1
Autotransporter adhesin.
  
     0.470
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.