STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM41171.1Helix-turn-helix. (114 aa)    
Predicted Functional Partners:
SEM41195.1
mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system.
 
     0.947
SEL91168.1
mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system.
 
     0.778
SEM35530.1
Curli biogenesis system outer membrane secretion channel CsgG.
  
    0.604
SEM35585.1
Hypothetical protein.
  
     0.584
SEM35560.1
Hypothetical protein.
  
     0.563
SEM41220.1
Hypothetical protein.
       0.513
ihfA
Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
   
  
 0.487
recX
Regulatory protein; Modulates RecA activity; Belongs to the RecX family.
     
 0.478
SEM49635.1
Addiction module antidote protein, HigA family.
  
    0.474
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
      
 0.473
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.