Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEM42332.1 | SEM42362.1 | SAMN05444853_11711 | SAMN05444853_11712 | FeS assembly protein IscX. | Ferredoxin, 2Fe-2S. | 0.991 |
SEM42332.1 | SEM42413.1 | SAMN05444853_11711 | SAMN05444853_11714 | FeS assembly protein IscX. | Protein of unknown function DUF2625. | 0.521 |
SEM42332.1 | SEM42464.1 | SAMN05444853_11711 | SAMN05444853_11716 | FeS assembly protein IscX. | Iron-sulfur cluster assembly protein; Is able to transfer iron-sulfur clusters to apo-ferredoxin. Multiple cycles of [2Fe2S] cluster formation and transfer are observed, suggesting that IscA acts catalytically. Recruits intracellular free iron so as to provide iron for the assembly of transient iron-sulfur cluster in IscU in the presence of IscS, L-cysteine and the thioredoxin reductase system; Belongs to the HesB/IscA family. | 0.677 |
SEM42332.1 | SEM42487.1 | SAMN05444853_11711 | SAMN05444853_11717 | FeS assembly protein IscX. | Nitrogen fixation protein NifU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | 0.733 |
SEM42332.1 | SEM42539.1 | SAMN05444853_11711 | SAMN05444853_11719 | FeS assembly protein IscX. | Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor. | 0.467 |
SEM42332.1 | cyaY | SAMN05444853_11711 | SAMN05444853_10391 | FeS assembly protein IscX. | CyaY protein; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis. | 0.650 |
SEM42332.1 | hscA | SAMN05444853_11711 | SAMN05444853_11713 | FeS assembly protein IscX. | Molecular chaperone HscA; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. | 0.929 |
SEM42332.1 | hscB | SAMN05444853_11711 | SAMN05444853_11715 | FeS assembly protein IscX. | Molecular chaperone HscB; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family. | 0.938 |
SEM42332.1 | iscS | SAMN05444853_11711 | SAMN05444853_11718 | FeS assembly protein IscX. | Cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. | 0.739 |
SEM42332.1 | nfuA | SAMN05444853_11711 | SAMN05444853_10114 | FeS assembly protein IscX. | Fe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.568 |
SEM42362.1 | SEM42332.1 | SAMN05444853_11712 | SAMN05444853_11711 | Ferredoxin, 2Fe-2S. | FeS assembly protein IscX. | 0.991 |
SEM42362.1 | SEM42413.1 | SAMN05444853_11712 | SAMN05444853_11714 | Ferredoxin, 2Fe-2S. | Protein of unknown function DUF2625. | 0.535 |
SEM42362.1 | SEM42464.1 | SAMN05444853_11712 | SAMN05444853_11716 | Ferredoxin, 2Fe-2S. | Iron-sulfur cluster assembly protein; Is able to transfer iron-sulfur clusters to apo-ferredoxin. Multiple cycles of [2Fe2S] cluster formation and transfer are observed, suggesting that IscA acts catalytically. Recruits intracellular free iron so as to provide iron for the assembly of transient iron-sulfur cluster in IscU in the presence of IscS, L-cysteine and the thioredoxin reductase system; Belongs to the HesB/IscA family. | 0.893 |
SEM42362.1 | SEM42487.1 | SAMN05444853_11712 | SAMN05444853_11717 | Ferredoxin, 2Fe-2S. | Nitrogen fixation protein NifU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | 0.974 |
SEM42362.1 | SEM42539.1 | SAMN05444853_11712 | SAMN05444853_11719 | Ferredoxin, 2Fe-2S. | Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor. | 0.546 |
SEM42362.1 | cyaY | SAMN05444853_11712 | SAMN05444853_10391 | Ferredoxin, 2Fe-2S. | CyaY protein; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis. | 0.920 |
SEM42362.1 | hscA | SAMN05444853_11712 | SAMN05444853_11713 | Ferredoxin, 2Fe-2S. | Molecular chaperone HscA; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. | 0.961 |
SEM42362.1 | hscB | SAMN05444853_11712 | SAMN05444853_11715 | Ferredoxin, 2Fe-2S. | Molecular chaperone HscB; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family. | 0.969 |
SEM42362.1 | iscS | SAMN05444853_11712 | SAMN05444853_11718 | Ferredoxin, 2Fe-2S. | Cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. | 0.961 |
SEM42362.1 | nfuA | SAMN05444853_11712 | SAMN05444853_10114 | Ferredoxin, 2Fe-2S. | Fe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.614 |
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