Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SEM52716.1Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. (669 aa)    
Predicted Functional Partners:
proQ
ProP effector; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.
  
  
 0.845
SEL91915.1
Probable lipoprotein NlpC.
    
 
 0.710
SEM17010.1
N-acetylmuramoyl-L-alanine amidase.
  
  
 0.578
SEM52767.1
LD-carboxypeptidase LdcB, LAS superfamily.
  
    0.559
rsmJ
16S rRNA (guanine1516-N2)-methyltransferase; Specifically methylates the guanosine in position 1516 of 16S rRNA.
       0.547
SEM52748.1
Potassium efflux system protein.
  
    0.546
SEL89533.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
  
  
 0.528
SEM20151.1
Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB.
 
   
 0.476
SEL90705.1
Regulator of sigma E protease.
 
  
 0.461
SEM50902.1
Adenylyltransferase and sulfurtransferase.
  
    0.449
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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