Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM55685.1Phospholipid transport system substrate-binding protein. (212 aa)    
Predicted Functional Partners:
SEM55710.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
 0.996
SEM55662.1
Phospholipid transport system transporter-binding protein.
  
 
 0.991
SEM55740.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
 
 0.974
SEM55766.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 
 0.971
SEM30986.1
Phospholipid-binding lipoprotein MlaA.
 
 
 
 0.916
SEM55634.1
Acid stress-induced BolA-like protein IbaG/YrbA, predicted regulator of iron metabolism; Belongs to the BolA/IbaG family.
       0.780
lptC
Lipopolysaccharide export system protein LptC; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
 
    0.680
lptD
LPS-assembly protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
   
 0.667
SEM24950.1
DNA-nicking endonuclease, Smr domain.
  
     0.623
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.622
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.