STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM55685.1Phospholipid transport system substrate-binding protein. (212 aa)    
Predicted Functional Partners:
SEM55710.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
 0.993
SEM55662.1
Phospholipid transport system transporter-binding protein.
  
 
 0.982
SEM55740.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
 
 0.965
SEM55766.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 
 0.961
SEM30986.1
Phospholipid-binding lipoprotein MlaA.
 
 
 
 0.802
SEM55634.1
Acid stress-induced BolA-like protein IbaG/YrbA, predicted regulator of iron metabolism; Belongs to the BolA/IbaG family.
       0.726
lptD
LPS-assembly protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
   
 0.686
lptC
Lipopolysaccharide export system protein LptC; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
 
    0.666
SEM24950.1
DNA-nicking endonuclease, Smr domain.
  
     0.623
SEM42799.1
Hypothetical protein.
  
     0.620
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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