STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM55710.1phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein. (167 aa)    
Predicted Functional Partners:
SEM55740.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
 0.999
SEM55766.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 0.998
SEM55685.1
Phospholipid transport system substrate-binding protein.
 
 0.993
SEM55662.1
Phospholipid transport system transporter-binding protein.
  
 0.962
SEM30986.1
Phospholipid-binding lipoprotein MlaA.
 
   
 0.797
SEM55634.1
Acid stress-induced BolA-like protein IbaG/YrbA, predicted regulator of iron metabolism; Belongs to the BolA/IbaG family.
     
 0.636
SEM55791.1
Glyoxylase, beta-lactamase superfamily II.
       0.577
SEM55820.1
Uncharacterized conserved protein YcbK, DUF882 family.
  
    0.566
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.501
lptD
LPS-assembly protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
   
 0.415
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.